Revision as of 11:54, 18 March 2021

Annotations must follow the INSDC vocabulary (http://www.insdc.org/files/feature_table.html):

1 trnG

CharSet trnG_tRNA = 1-13;

CharSet trnG_exon = 1-13;

CharSet trnGIGS_misc_feature = 14-1103; change this to "trnG-trnS intergenic spacer" in embl-File before submission

2 ITS

CharSet 18S_rRNA = 1-3;

CharSet ITS1_misc_RNA = 4-303;

CharSet 58S_misc_feature = 304-459; change this to "5.8S" in embl-File before submission

CharSet ITS2_misc_RNA = 460-723;

CharSet 28S_rRNA = 724-747;

3 rpl16

CharSet rpl16_intron = 1-1120;

CharSet rpl16_gene = 1-1120;

CharSet rpl16_exon = 1121-1123;

4 trnL-trnF

CharSet trnL_exon = 1-17 575-624;

CharSet trnL_gene = 1-17 575-624;

CharSet trnL_tRNA = 1-17 575-624;

CharSet trnL_intron = 18-574;

CharSet trnLtrnF_misc_feature = 625-989; change this to "trnL-trnF" in embl-File before submission

CharSet trnF_gene = 990-1049;

CharSet trnF_tRNA = 990-1049;

5 trnK-matK

CharSet trnK_exon = 1-3 2563-2597;

CharSet trnK_gene = 1-3 2563-2597;

CharSet trnK_tRNA = 1-3 2563-2597;

CharSet trnK_intron = 4-704;

CharSet matK_gene = 705-2240;

CharSet matK_CDS = 705-2240; (optional)

CharSet trnKpsbA_misc_feature = 2598-2839; change this to "trnK-psbA" in embl-File before submission

CharSet psbA_gene = 2840-2897;

CharSet psbA_CDS = 2840-2897; (optional, must be a multiple of 3!)